Resources

Facilities and Services

CPRI: The Center for Pharmaceutical Research and Innovation

https://pharmacy.uky.edu/research-0/research-centers/cpri

Bioinformatic tools

Chimera – visualization and analysis of molecular structures

https://www.cgl.ucsf.edu/chimera/

NCBI – Database and basic local alignment search tool

https://www.ncbi.nlm.nih.gov/

EMBL-EBI – Database and basic local alignment search tool

https://www.ebi.ac.uk/

Integrated Microbial Genomes and Microbiomes – Database for sequenced organisms with search tools

https://img.jgi.doe.gov/

FramePlot – ORF finder for high GC DNA

http://nocardia.nih.go.jp/fp4/

2ndFind – Secondary metabolite biosynthetic gene cluster finder

http://biosyn.nih.go.jp/2ndfind/

HHpred – Homology detection & structure prediction

https://toolkit.tuebingen.mpg.de/tools/hhpred

SWISS-MODEL – protein structure homology-modelling

https://swissmodel.expasy.org/

AntiSMASH – Secondary metabolite biosynthetic gene cluster finder

https://antismash.secondarymetabolites.org/#!/start